2DE‐based approach for estimation of number of protein species in a cell

Insufficient sensitivity of methods for detection of proteins at a single molecule level does not yet allow obtaining the whole image of human proteome. But to go further, we need at least to know the proteome size, or how many different protein species compose this proteome. This is the task that could be at least partially realized by the method described in this article. The approach used in our study is based on detection of protein spots in 2DE after staining by protein dyes with various sensitivities. As the different protein spots contain different protein species, counting the spots opens a way for estimation of number of protein species. The function representing the dependence of the number of protein spots on sensitivity or LOD of protein dyes was generated. And extrapolation of this function curve to theoretical point of the maximum sensitivity (detection of a single smallest polypeptide) allowed to counting the number of different molecules (polypeptide species) at the concentration level of a single polypeptide per proteome. Using this approach, it was estimated that the minimal numbers of protein species for model objects, Escherichia coli and Pirococcus furiosus, are 6200 and 3400, respectively. We expect a single human cell (HepG2) to contain minimum 70 000 protein species.     

Electrochemical derivatization‐capillary electrophoresis‐contactless conductivity detection: A versatile strategy for simultaneous determination of cationic,anionic, and neutral analytes

The simultaneous determination of cationic, anionic, and neutral analytes in a real sample was demonstrated by coupling electrochemical (EC) derivatization with counter‐EOF CE‐C⁴D. An EC flow cell was used to oxidize alcohols from an antiseptic mouthwash sample into carboxylic acids at a platinum electrode in acid medium. The carboxylates formed in the derivatization process and other sample ingredients, such as benzoate, saccharinate, and sodium ions, were separated in counter‐flow mode and detected in one run in Tris‐HCl buffer, pH 8.6. Fewer than 5 min were needed to complete each analysis with the automated flow system comprising solenoid pumps for the management of solutions. Insights into the electrochemistry of benzoic acid, present in the sample matrix, were also gained by EC‐CE‐C⁴D; more specifically, by applying potentials higher than 1.47 V to the platinum electrode, some formiate and minute amounts of salicylate were detected.     

Effect of Experimental Variables on the Combustion Characteristics of Water-in-Diesel Emulsion Fuels

Water-in-diesel (W/D) emulsion fuels were prepared through an ultrasonic processor by using high energy emulsification method. Accordingly, the physical and chemical properties were analyzed. A decrease in viscosity was found in the emulsion fuel in contrast to the neat diesel which signifies the enhanced fluidity of the fuel. The emulsion fuel was then used to carry combustion tests in an internal combustion engine. A decrease in exhaust temperature was observed when a high surfactant to water ratio was used, which lead to minimal heat loss. As water is emulsified with diesel, effectiveness of combustion is improved rather than neat diesel fuel. It was also explored that the addition of water-in-diesel is influential in terms of reduction in exhaust gas emission such as carbon dioxide, carbon monoxide, ammonia from the internal combustion engine. Therefore, this type of emulsion fuel would be a useful contribution in the fuel economy, but also in making it environmentally friendly since diesel fuel is now considered one of the leading fuels causing ecological contamination.     

Aromatic Superhalogens

No organic molecules with electron affinities near or above those of halogens are known. We show for the first time that aromaticity rules can be used to design molecules with electron affinities far exceeding those of halogen atoms either by tailoring the ligands of cyclopentadienyl or by multiple benzoannulations of cyclopentadienyl in conjunction with the substitution of CH groups with isoelectronic N atoms. Results based on density functional theory revealed that the electron affinities of some of these organic molecules can reach as high as 5.59 eV, thus opening the door to new class of superhalogens that contain neither a metal nor a halogen atom.     

Comparison of total fluorine, extractable organic fluorine and perfluorinated compounds in the blood of wild and pefluorooctanoate (PFOA)-exposed rats: Evidence for the presence of other organofluorine compounds

The widespread occurrence and environmental persistence of perfluorinated compounds (PFCs) received worldwide attention recently. Exhaustive analysis of all fluorinated compounds in an environmental sample can be daunting because of the constraints in the availability of analytical standards and extraction methods. Combustion ion chromatographic technique for trace fluorine analysis was used to assess the concentrations of known PFCs (e.g., PFOS, PFOA) and total fluorine (TF) in the blood of wild rats collected from Japan. The technique was further validated using tissues from PFOA-exposed rats. Six PFCs (PFOS, PFOSA, PFUnDA, PFDA, PFNA, and PFOA) were detected in all of the wild rat blood samples. Concentrations of extractable organic fluorine (EOF) in fraction 1 (Fr1; MTBE extraction) of wild rats ranged 60.9-134 ng F mL⁻¹, while those in fraction 2 (Fr2; hexane) were below LOQ (32 ng F mL⁻¹); TF concentrations in the blood of wild rats ranged from 59.9-192 ng F mL⁻¹. The contribution of known PFCs in EOF-Fr1 (MTBE) varied from 9% to 89% (56% on average), and known PFC concentrations in TF content were less than 25%. In contrast, TF concentrations in the blood of PFOA-exposed rats ranged from 46900 to 111000 ng F mL⁻¹, with PFOA contributing over 90% of TF. A comparison of results from the samples analyzed in this study and the literature revealed three distinct groups with PFOA/known PFC and TF levels (i.e., wild rats and general population, occupationally exposed workers, and PFOA-exposed laboratory rats). The mass balance analysis of the different forms of fluorine in blood suggested the presence of other forms of organic fluorine in addition to known PFCs.     

Energetics of flavone and flavanone

In this work, we have determined the experimental standard (p° = 0.1 MPa) molar enthalpies of formation, in gas phase, of flavone and flavanone.These results were obtained by combining the standard molar enthalpies of formation in the condensed phase with the standard molar enthalpies of sublimation. The former values were derived from combustion experiments in oxygen, at T = 298.15 K, in a static bomb calorimeter. The values of the standard molar enthalpies of sublimation were obtained by Calvet microcalorimetry and corrected to T = 298.15 K.High-level density functional theory calculations using the B3LYP hybrid exchange–correlation energy functional with extended basis sets and more accurate correlated computational techniques of the MCCM/3 suite have been performed for the compounds.The obtained results, experimental and computational, for flavone and flavanone were compared with those obtained for chromone and chromanone, respectively.     

A study of antimony complexed to soil-derived humic acids and inorganic antimony species along a Massachusetts highway

Antimony is a toxic metalloid and is often present in inorganic forms such as more toxic Sb(III) and less toxic Sb(V). Auto brake linings are major contributors to antimony emissions along heavily traveled highways. In this study the distribution of water extractable Sb(III) and Sb(V) species along a Massachusetts highway was investigated. Antimony complexed to roadside soil-derived humic acids was studied by ion chromatography (IC) and size exclusion chromatography (SEC) coupled to inductively coupled plasma-mass spectrometry (ICP-MS). Thirty surface soil and soil core samples along route 116 in western Massachusetts were collected. Two soil-derived humic acids were extracted from the roadside soils. Elevated levels of nitric acid-extractable Sb (range: 2.9-24.9 µg/kg) and Pb (range: 10.4-2420 mg/kg) were found in the soil along the road and correlated well with highway traffic patterns. Sb(V) was the dominant species present in both surface and soil core samples, and is mostly confined to the top 20-cm layer of soil. HA mediated Sb(III) to Sb(V) oxidation was relatively fast and demonstrated pseudo-first order kinetics, where pseudo rate constant k is 3.033 h^-1. Antimony bound to soil-derived humic acid molar mass fractions was identified.     

Synthesis of nanosized silicon particles by a rapid metathesis reaction

A solid-state rapid metathesis reaction was performed in a bed of sodium silicofluoride (Na₂SiF₆) and sodium azide (NaN₃) powders diluted with sodium fluoride (NaF), to produce silicon nanoparticles. After a local ignition of Na₂SiF₆+4NaN₃+kNaF mixture (here k is mole number of NaF), the reaction proceeded in a self-sustaining combustion mode developing high temperatures (950–1000 °C) on very short time scales (a few seconds). Silicon nanoparticles prepared by the combustion process was easily separated from the salt byproducts by simple washing with distilled water. The structural and morphological studies on the nanoparticles were carried out using X-ray diffractometer (XRD) and field emission scanning electron microscope (FESEM). The mean size of silicon particles calculated from the FESEM image was about 37.75 nm. FESEM analysis also shows that the final purified product contains a noticeable amount of silicon fibers, dendrites and blocks, along with nanoparticles. The mechanism of Si nanostructures formation is discussed and a simple model for interpretation of experimental results is proposed.     

Comparing the hydrodesulfurization reaction of thiophene on γ-Al2O3 supported CoMo, NiMo and NiW sulfide catalysts

The thiophene hydrodesulfurization (HDS) reaction on γ-Al₂O₃ supported CoMo, NiMo and NiW sulfide catalysts was compared in order to gain insight into the promoter effect on direct desulfurization (DDS) and hydrogenation (HYD) pathways. Ni-promoted Mo (or W) sulfide catalysts favor the hydrogen transfer reactions relative to CoMo sulfide catalyst, which facilitates the direct route instead. This different performance and also the dependence of the apparent Arrhenius parameters with the catalyst formulation were attributed to the major participation of Mo (or W) edge for the Ni-containing catalysts and S edge for CoMo sulfide catalyst upon the thiophene-HDS reaction.     

Combustion properties and thermal degradation behavior of polylactide with an effective intumescent flame retardant

An intumescent flame retardant spirocyclic pentaerythritol bisphosphorate disphosphoryl melamine (SPDPM) has been synthesized and its structure was characterized by Fourier transformed infrared spectrometry (FTIR), ¹H and ³¹P nuclear magnetic resonances (NMR). A series of polylactide (PLA)-based flame retardant composites containing SPDPM were prepared by melt blending method. The combustion properties of PLA/SPDPM composites were evaluated through UL-94, limiting oxygen index (LOI) tests and microscale combustion calorimetry (MCC) experiments. It is found that SPDPM integrating acid, char and gas sources significantly improved the flame retardancy and anti-dripping performance of PLA. When 25 wt% flame retardant was added, the composites achieved UL-94 V0, and the LOI value was increased to 38. Thermogravimetric analysis (TGA) showed that the weight loss rate of PLA was decreased by introduction of SPDPM. In addition, the thermal degradation process and possible flame retardant mechanism of PLA composites with SPDPM were analyzed by in situ FTIR.